Glyma05g36210 - SoyBase

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Report for Sequence Feature Glyma05g36210

Feature Type:	gene_model
Chromosome:	Gm05
Start:	40065085
stop:	40066768
Source:	JGI
Version:	Wm82.a1.v1.1
High confidence:	yes

A newer version of this gene model can be found here:

Annotations for Glyma05g36210

Database ID	Annotation Type	Annotation Description	Annotation Source	Match Score	Evidence Code
AT4G26220	AT	Annotation by Michelle Graham. TAIR10: S-adenosyl-L-methionine-dependent methyltransferases superfamily protein \| chr4:13284179-13285146 FORWARD LENGTH=232	SoyBase	E_val: 2.00E-105	ISS
GO:0005829	GO-cc	Annotation by Michelle Graham. GO Cellular Compartment: cytosol	SoyBase	N/A	ISS
GO:0008171	GO-mf	Annotation by Michelle Graham. GO Molecular Function: O-methyltransferase activity	SoyBase	N/A	ISS
KOG1663	KOG	O-methyltransferase	JGI		ISS
PTHR10509	Panther	O-METHYLTRANSFERASE	JGI		ISS
PF01596	PFAM	O-methyltransferase	JGI		ISS
UniRef100_F2YBA9	UniRef	Annotation by Michelle Graham. Most informative UniRef hit: Anthocyanin 3'-O-methyltransferase n=1 Tax=Glycine max RepID=F2YBA9_SOYBN	SoyBase	E_val: 2.00E-167	ISS
UniRef100_I1K629	UniRef	Annotation by Michelle Graham. Best UniRef hit: Uncharacterized protein n=1 Tax=Glycine max RepID=I1K629_SOYBN	SoyBase	E_val: 0	ISS

Proteins Associated with Glyma05g36210

Locus	Gene Symbol	Protein Name
	AOMT	Anthocyanin O-methyltransferase

Expression Patterns of Glyma05g36210

Gene expression representations made with eFP at the University of Toronto.
Waese et al. 2017, Plant Cell 29(8):1806-1821 ePlant: Visualizing and Exploring Multiple Levels of Data for Hypothesis Generation in Plant Biology


Libault et al. 2010, Plant Phys 152(2):541-552. Complete Transcriptome of the Soybean Root Hair Cell, a Single-Cell Model, and Its Alteration in Response to Bradyrhizobium japonicum Infection	Severin et al. 2010, BMC Plant Biology 10:160 RNA-Seq Atlas of Glycine max: A guide to the soybean transcriptome

To see more experiments click HERE

Paralogs of Glyma05g36210

Paralog	Evidence	Comments
Glyma08g03440	IGC	Paralogs in soybean determined by Steven Cannon using BLAST, DAGChainer, PAML, and selection of gene pairs from synteny blocks with median Ks values of less than 0.3.

Gene model name correspondences to Glyma05g36210 Gene Call Version Wm82.a1.v1.1

Corresponding Name	Annotation Version	Evidence	Comments
Glyma.05g223400	Wm82.a2.v1	IGC	As supplied by JGI

References for Glyma05g36210

Schmutz et al. 2010
Genome sequence of the palaeopolyploid soybean
Nature 2010, 463:178-183

Transcripts of Glyma05g36210

Limit To All Plant Sequences

>Glyma05g36210.2   sequence type=transcript   gene model=Glyma05g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATATAAGAAACACACTACACACACTCCCCTCAATTGTTTGTTGAAGAGGTGAAGGAATGGAGGTTGGAGGTTGCAACGTGCAACCGCCTCTTAGCACTTCTTTTTAAATGGCCGAAGAGGAGAGGCATTGTAAGTCGAAGAGAAAAGAAGGCTTAACAAAGCACAGAATGTCCTCTAATCCAGTAATACTGCAGAGTGTGAACTTGACCAAGTATATACTGGAGACCAGCGTTTATCCACGAGAAGAAGAGACTCTCAAAGAGCTAAGGAAAGCCACTGCAGGCCACCCTTGGGGCTTTATGGGCGCTGCTCCCGATGCGGGTCAGCTAATGACCTTGCTCTTGAAGTTGTTGAATGCTAAGAAGACAATTGAAGTGGGAGTTTTTACTGGGTACTCTCTTCTCCTCACTGCACTTACCATTCCAGATGATGGAAAGATTATAGCCCTGGATCCAGACAGAGAAGCTTATGAGATAGGATTACCGTTCATTAAAAAGGCTGGTGTAGAGCACAAGATCGACTTCATAGAGTCTCCAGCTCTACCGGTTCTTGATAAACTCTTAGAAGATCCTTCAAATAAGGAAAGTTTTGACTTTGCCTTCGTTGATGCCGATAAAGATAACTATTGGAATTACCACGAGAGGCTTCTTAAACTGGTGATGGCTTCACTATCTGCAGGCGTGCTCATTGAACATCATCTGCCAATGTTGTATTAAGATTCAAGTTAATTTCATGTACTATGTTTTCGTGTTTTATTTTTCTCTCTTTTGGGAGTGGGGGGTTTACTAAATTTACGTGATAACTTGTGGTATAATTTGATTTACCTCCGACTCTGGGGCCTATGCCCTATGGTGTGACTCTAATGTGAAACTGGGCGTGTCGCTATTTATTTACTAGTACTAAATAAAATAAAATGTTGTGTCTATA

Coding sequences of Glyma05g36210

Limit To All Plant Sequences

>Glyma05g36210.1   sequence type=CDS   gene model=Glyma05g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAAGAGGAGAGGCATTGTAAGTCGAAGAGAAAAGAAGGCTTAACAAAGCACAGAATGTCCTCTAATCCAGTAATACTGCAGAGTGTGAACTTGACCAAGTATATACTGGAGACCAGCGTTTATCCACGAGAAGAAGAGACTCTCAAAGAGCTAAGGAAAGCCACTGCAGGCCACCCTTGGGGCTTTATGGGCGCTGCTCCCGATGCGGGTCAGCTAATGACCTTGCTCTTGAAGTTGTTGAATGCTAAGAAGACAATTGAAGTGGGAGTTTTTACTGGGTACTCTCTTCTCCTCACTGCACTTACCATTCCAGATGATGGAAAGATTATAGCCCTGGATCCAGACAGAGAAGCTTATGAGATAGGATTACCGTTCATTAAAAAGGCTGGTGTAGAGCACAAGATCGACTTCATAGAGTCTCCAGCTCTACCGGTTCTTGATAAACTCTTAGAAGATCCTTCAAATAAGGAAAGTTTTGACTTTGCCTTCGTTGATGCCGATAAAGATAACTATTGGAATTACCACGAGAGGCTTCTTAAACTGGTAAAGATTGGTGGGTTAATCATCTATGATAACACTCTCTGGGGTGGAACTGTTGCCTGGCCTGAAGAGGATGTTCCTGTACCAAAAAGGAAATTCAGGCAGGCTACACTGGCTTTCAACAAAGCAATTGCTGATGATTCTCGTGTTGAAATTTCTGTTGTTTCAATAGGTGATGGCTTCACTATCTGCAGGCGTGCTCATTGA

>Glyma05g36210.2   sequence type=CDS   gene model=Glyma05g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
ATGGCCGAAGAGGAGAGGCATTGTAAGTCGAAGAGAAAAGAAGGCTTAACAAAGCACAGAATGTCCTCTAATCCAGTAATACTGCAGAGTGTGAACTTGACCAAGTATATACTGGAGACCAGCGTTTATCCACGAGAAGAAGAGACTCTCAAAGAGCTAAGGAAAGCCACTGCAGGCCACCCTTGGGGCTTTATGGGCGCTGCTCCCGATGCGGGTCAGCTAATGACCTTGCTCTTGAAGTTGTTGAATGCTAAGAAGACAATTGAAGTGGGAGTTTTTACTGGGTACTCTCTTCTCCTCACTGCACTTACCATTCCAGATGATGGAAAGATTATAGCCCTGGATCCAGACAGAGAAGCTTATGAGATAGGATTACCGTTCATTAAAAAGGCTGGTGTAGAGCACAAGATCGACTTCATAGAGTCTCCAGCTCTACCGGTTCTTGATAAACTCTTAGAAGATCCTTCAAATAAGGAAAGTTTTGACTTTGCCTTCGTTGATGCCGATAAAGATAACTATTGGAATTACCACGAGAGGCTTCTTAAACTGGTGATGGCTTCACTATCTGCAGGCGTGCTCATTGAACATCATCTGCCAATGTTGTATTAA

Predicted protein sequences of Glyma05g36210

Limit To All Plant Sequences

>Glyma05g36210.1   sequence type=predicted peptide   gene model=Glyma05g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEERHCKSKRKEGLTKHRMSSNPVILQSVNLTKYILETSVYPREEETLKELRKATAGHPWGFMGAAPDAGQLMTLLLKLLNAKKTIEVGVFTGYSLLLTALTIPDDGKIIALDPDREAYEIGLPFIKKAGVEHKIDFIESPALPVLDKLLEDPSNKESFDFAFVDADKDNYWNYHERLLKLVKIGGLIIYDNTLWGGTVAWPEEDVPVPKRKFRQATLAFNKAIADDSRVEISVVSIGDGFTICRRAH*

>Glyma05g36210.2   sequence type=predicted peptide   gene model=Glyma05g36210   sequence assembly version=Glyma 1.0   annotation version=1.1   JGI Gene Call confidence=high
MAEEERHCKSKRKEGLTKHRMSSNPVILQSVNLTKYILETSVYPREEETLKELRKATAGHPWGFMGAAPDAGQLMTLLLKLLNAKKTIEVGVFTGYSLLLTALTIPDDGKIIALDPDREAYEIGLPFIKKAGVEHKIDFIESPALPVLDKLLEDPSNKESFDFAFVDADKDNYWNYHERLLKLVMASLSAGVLIEHHLPMLY*

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